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Rory Stark
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Diffbind heatmap color change
diffbind
rory stark
6.8 years ago
andrew.gehrke
• 0
0
votes
2
replies
1.2k
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Diffbind analysis warning
rory stark
7.4 years ago • updated 7.0 years ago
mforoo1
• 0
1
vote
7
replies
2.7k
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loading dba.plotVolcano in DiffBind
diffbind
chipseq
atac-seq
rory stark
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
andrew.gehrke
• 0
1
vote
8
replies
1.3k
views
Diffbind multiple blocking factor
diffbind
rory stark
chip seq
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
bioinfouser2
▴ 10
1
vote
2
replies
849
views
The coordinate system problem about DiffBind output
diffbind
Rory Stark
coordinate
updated 4.2 years ago by
Rory Stark
★ 5.2k • written 4.2 years ago by
Guandong Shang
▴ 40
0
votes
7
replies
1.9k
views
CHIPQC error regarding BiocParallel
CHIPQC
Diffbind
chipseq
rory stark
Thomas Carroll
updated 21 months ago by
arisarkar88
▴ 40 • written 4.1 years ago by
bioinfouser2
▴ 10
0
votes
1
reply
1.9k
views
DiffBind TMM normalization
Rory Stark
diffbind
TMM
edgeR
chipseq
updated 7.9 years ago by
Rory Stark
★ 5.2k • written 8.0 years ago by
akdess
• 0
7 results • Page
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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